Cheesy Lemon Muffins

Featured in Sweet Treat Sensations.

These muffins layer tangy lemon with a smooth cheesecake-like core and buttery crumb topping. A zesty glaze caps off this perfect snack or morning bite.

Ranah
Updated on Tue, 08 Apr 2025 23:04:38 GMT
A muffin with lemon on top and creamy filling sits on a plate. Pin it
A muffin with lemon on top and creamy filling sits on a plate. | chefemmakitchen.com

My Lemon Cream Cheese Muffins bring a splash of sunshine to breakfast time. These treats mix tangy citrus with a surprising creamy center and a crumbly buttery topping. I enjoy making these during slow Sunday mornings - the house gets filled with this wonderful lemony smell and somehow everyone shows up right when they're ready to eat.

What Makes These Special

These muffins stand out from the crowd. Each mouthful begins with a crunchy topping, then moves to soft lemony cake and the hidden treasure - that velvety cheese center. The zesty citrus keeps them from getting too sweet while the cream cheese adds this wonderful richness. I've taken these to so many get-togethers and always return with nothing but requests for how to make them.

Ingredients You'll Want

  • Flour: Standard all-purpose makes for that soft, perfect texture
  • Both Sugars: White and brown give you the tastiest mix
  • Quality Butter: Chilled for topping, room temp for mix - it's important!
  • Real Lemons: Make sure to grab the zest as that's where the magic happens
  • Greek Yogurt: My trick for keeping everything soft and juicy
  • Cream Cheese: Make sure it's fully room temperature for the creamiest filling
  • Glaze Stuff: Simple mix of lemon juice and powdered sugar

Baking Steps

Getting Started:
Warm up your oven to 425°F and get your muffin pan ready with liners.
Create Your Topping:
Combine the dry stuff with cold butter until it gets crumbly - I just use my hands for this.
Whip Up The Batter:
Beat butter and sugar until light and fluffy, drop in eggs and lemon zest - the smell is already fantastic.
Mix The Middle:
Whip that cream cheese until it's completely smooth.
Build Your Muffins:
Some batter, then filling, more batter on top, finished with that crumbly mix.
Bake Away:
Look for golden tops and let that lemony aroma tell you they're done.

Helpful Hints

Getting the temps right makes all the difference. Keep your topping butter cold for those perfect crumbles, but everything else should be warm. I always get the zest off my lemons before squeezing them and sometimes throw in extra because more lemon flavor can't hurt anyone.

A zoomed-in view of a lemon treat with icing, crumbs on top, and a lemon slice, showing its fluffy inside where someone took a bite. Pin it
A zoomed-in view of a lemon treat with icing, crumbs on top, and a lemon slice, showing its fluffy inside where someone took a bite. | chefemmakitchen.com

Different Flour Choices

I mostly use all-purpose flour, but whole wheat works fine too - just know it'll be a bit heavier. Sometimes I go half and half for the perfect balance between light and hearty.

Storage Tips

They'll stay good on your counter for three days (if nobody eats them first!). Stick them in the fridge to last longer, and give them a quick 10-second heat in the microwave before eating - it makes the cheese center all gooey and wonderful.

Do-Ahead Options

These freeze so well! I often double up and tuck half away for unexpected company. Just let them thaw overnight and they'll taste like you just made them.

Tasty Swaps

I'll throw in some fresh blueberries or sprinkle in poppy seeds sometimes. That's what makes baking fun - putting your own spin on things. The basic recipe is so reliable it can handle whatever creative ideas you've got.

Time-Saving Trick

Want these for a morning gathering? Fix your batter the night before. Keep it in the fridge covered up, then just put everything together and bake in the morning. Everyone will think you woke up super early to make them.

A lemon treat with crumbly bits on top and a lemon slice, cut open to show the creamy filling inside. Pin it
A lemon treat with crumbly bits on top and a lemon slice, cut open to show the creamy filling inside. | chefemmakitchen.com

Great Pairings

These muffins go perfectly with some hot coffee or tea. On lazy weekends, I'll add some fresh fruit and maybe a scoop of yogurt for a breakfast that feels a bit fancy.

Fancy Touches

Add some fresh whipped cream or drizzle with honey to make them extra special. For company brunches, I'll stick a tiny wedge of lemon on top - those small details really make people happy.

Thoughtful Gifts

These make such nice presents! I enjoy wrapping them in cute boxes for friends and neighbors. There's nothing quite like giving someone something you made yourself.

Crowd Pleasers

From my fussy little one to my food-obsessed buddies, nobody can resist these muffins. The lemon keeps them bright and interesting while the cream cheese makes them feel like a real treat.

The Secret Appeal

It's all about balance that makes you can't stop at one - soft cake, smooth filling, crunchy topping and that zingy lemon running through it all. Make them once and you'll see why they've become such a regular feature in my home.

A detailed shot of a lemon dessert topped with crumbs and a slice of lemon. Pin it
A detailed shot of a lemon dessert topped with crumbs and a slice of lemon. | chefemmakitchen.com

Frequently Asked Questions

→ Can I make these gluten-free?

Absolutely! Swap regular flour with a gluten-free blend that includes xanthan gum. Make sure all your ingredients are gluten-free certified too.

→ How should I store these muffins?

Keep them in a sealed container in the fridge for up to five days because of the cheese inside. Let them warm up before munching for the best taste.

→ Can I freeze these muffins?

Sure can! Pop the unglazed ones in the freezer for three months max. Thaw overnight in the fridge and add glaze when you’re ready to enjoy.

→ Why start at a higher temperature?

Kicking off at 425°F gives a sky-high muffin top. Once you lower the heat, the insides bake slowly, so they’re perfect without burning.

→ Can I use regular yogurt instead of Greek?

Greek yogurt is nice and thick, but if all you have is regular, no worries! Just know the batter might be a touch runnier, but it still works fine.

Lemon Cheese Muffins

Fluffy muffins bursting with creamy cheesecake filling, finished off with a tangy glaze and a crumbly streusel top. A fun mix of textures and tang!

Prep Time
15 Minutes
Cook Time
25 Minutes
Total Time
40 Minutes
By: emma

Category: Desserts

Difficulty: Intermediate

Cuisine: American

Yield: 12 Servings (12 muffins)

Dietary: Vegetarian

Ingredients

01 1/4 cup granulated sugar (goes in the streusel).
02 1/4 cup light brown sugar.
03 6 tablespoons melted butter (used for streusel).
04 1 cup plain flour (for streusel topping).
05 1/4 teaspoon salt (add to streusel mix).
06 3/4 cup granulated sugar.
07 2 tablespoons freshly grated lemon zest.
08 1 teaspoon vanilla extract.
09 1/2 teaspoon baking powder.
10 1/4 teaspoon baking soda.
11 1/3 cup softened, unsalted butter.
12 1/4 teaspoon salt.
13 1 teaspoon lemon-flavored extract.
14 1 1/2 cups standard all-purpose flour (used for muffins).
15 2 eggs.
16 2/3 cup Greek-style yogurt.
17 2 tablespoons lemon juice.
18 1 teaspoon plain vanilla (used in the filling).
19 8 ounces room-temperature cream cheese.
20 1/4 cup sugar (mix into the filling).
21 1 1/2 - 2 1/2 teaspoons of lemon juice (used for the glaze).
22 3/4 cup powdered sugar.

Instructions

Step 01

Heat oven to 425°F and line your muffin tray with papers.

Step 02

Combine flour, sugars, and salt; stir in the melted butter until crumbs form.

Step 03

Start with the dry ingredients. Beat butter with sugar, then mix in eggs, lemon zest, extracts, yogurt, and juice. Add your dry mixture at the end.

Step 04

Blend cream cheese, sugar, and vanilla until it turns smooth.

Step 05

Layer the liners with batter, some cream cheese filling, more batter, and a topping of streusel.

Step 06

Lower oven temperature to 350°F and bake for 22–25 minutes. Let them cool before glazing.

Notes

  1. Swap regular flour with gluten-free mix if needed.
  2. Baking hotter at the start helps muffins get higher tops.

Tools You'll Need

  • Tray for muffins.
  • Hand or stand mixer.
  • A couple of mixing bowls.

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains dairy.
  • Has eggs.

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 380
  • Total Fat: 20 g
  • Total Carbohydrate: 45 g
  • Protein: 6 g